For it's 10-year anniversary, GameFAQs has released the top 100 games as chosen by its' users during their anniversary contest.
To give you an idea of the general composition of the GameFAQs populace, 15 of the top 100 are Squaresoft games (including every single US-released main-series Final Fantasy), 17 are Nintendo games (5 Zelda, 7 Mario, 3 Metroid plus a couple more). Only 11 are PC games, 4 of which are from Blizzard.
And poor Megaman didn't make it into the list. Good old Street Fighter II actually did better, coming in at 47.